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Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

Li, Xin; Yang, Ji; Shen, Min; Xie, Xing-Long; Liu, Guang-Jian; Xu, Ya-Xi; Lv, Feng-Hua; Yang, Hua; Yang, Yong-Lin; Liu, Chang-Bin; Zhou, Ping; Wan, Peng-Cheng; Zhang, Yun-Sheng; Gao, Lei; Yang, Jing-Quan; Pi, Wen-Hui; Ren, Yan-Ling; Shen, Zhi-Qiang; Wang, Feng; Deng, Juan; Xu, Song-Song; Salehian-Dehkordi, Hosein; Hehua, Eer; Esmailizadeh, Ali; Dehghani-Qanatqestani, Mostafa; Štěpánek, Ondřej; Weimann, Christina; Erhardt, Georg; Amane, Agraw; Mwacharo, Joram M.; Han, Jian-Lin; Hanotte, Olivier; Lenstra, Johannes A.; Kantanen, Juha; Coltman, David W.; Kijas, James W.; Bruford, Michael W.; Periasamy, Kathiravan; Wang, Xin-Hua; Li, Meng-Hua (2020)

 
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WGS_domestic_and_wild_sheep.pdf (3.251Mt)
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URI
https://www.nature.com/articles/s41467-020-16485-1

Li, Xin
Yang, Ji
Shen, Min
Xie, Xing-Long
Liu, Guang-Jian
Xu, Ya-Xi
Lv, Feng-Hua
Yang, Hua
Yang, Yong-Lin
Liu, Chang-Bin
Zhou, Ping
Wan, Peng-Cheng
Zhang, Yun-Sheng
Gao, Lei
Yang, Jing-Quan
Pi, Wen-Hui
Ren, Yan-Ling
Shen, Zhi-Qiang
Wang, Feng
Deng, Juan
Xu, Song-Song
Salehian-Dehkordi, Hosein
Hehua, Eer
Esmailizadeh, Ali
Dehghani-Qanatqestani, Mostafa
Štěpánek, Ondřej
Weimann, Christina
Erhardt, Georg
Amane, Agraw
Mwacharo, Joram M.
Han, Jian-Lin
Hanotte, Olivier
Lenstra, Johannes A.
Kantanen, Juha
Coltman, David W.
Kijas, James W.
Bruford, Michael W.
Periasamy, Kathiravan
Wang, Xin-Hua
Li, Meng-Hua

Julkaisusarja
Nature communications

Volyymi
11


Nature Publishing Group
2020
doi:10.1038/s41467-020-16485-1
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Julkaisun pysyvä osoite on
http://urn.fi/URN:NBN:fi-fe2020061042663
Tiivistelmä
Understanding the genetic changes underlying phenotypic variation in sheep (Ovis aries) may
facilitate our efforts towards further improvement. Here, we report the deep resequencing of
248 sheep including the wild ancestor (O. orientalis), landraces, and improved breeds. We
explored the sheep variome and selection signatures. We detected genomic regions harboring
genes associated with distinct morphological and agronomic traits, which may be past
and potential future targets of domestication, breeding, and selection. Furthermore, we found
non-synonymous mutations in a set of plausible candidate genes and significant differences
in their allele frequency distributions across breeds. We identified PDGFD as a likely causal
gene for fat deposition in the tails of sheep through transcriptome, RT-PCR, qPCR, and
Western blot analyses. Our results provide insights into the demographic history of sheep
and a valuable genomic resource for future genetic studies and improved genome-assisted
breeding of sheep and other domestic animals.
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